On Map Representations of DNA

نویسندگان

  • Douglas Jay Klein
  • Milan Randić
  • Boris Horvat
  • Gašper Jaklič
  • Dejan Plavšić
  • Tomaž Pisanski
چکیده

We have constructed graphical (qualitative and visual) representations of DNA sequences as 2D maps and their numerical (quantitative and computational) analysis. The maps are obtained by transforming the four-letter sequences (where letters represent the four nucleic bases) via a spiral representation over triangular and square cells grids into a four-color map. The so constructed maps are then represented by distance matrices. We consider the use of several matrix invariants as DNA descriptors for determining the degree of similarity of a selection of DNA sequences. (doi: 10.5562/cca2338)

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تاریخ انتشار 2013